## Publications – Nathan Cook, Research Scientist Group Leader

Title | First Author | Year | Journal | Citation | |
---|---|---|---|---|---|

An Integrated Scheme for Online Correction of Laser Focal Position | Coleman, S. | 2021 | 18th International Conference on Accelerator and Large Experimental Physics Control Systems (ICALEPCS) | S. Coleman, N. M. Cook, J. P. Edelen, R. Nagler, S. Barber, C. Berger, and J. van Tillborg, “An integrated scheme for online correction of laser focal position”, 18th International Conference on Accelerator and Large Experimental Physics Control Systems (ICALEPCS) 2021 | |

An Integrated Platform for High Performance Data Management and Analysis at X-ray Light Sources | Cook, N.M. | 2021 | 18th International Conference on Accelerator and Large Experimental Physics Control Systems (ICALEPCS) | N. M. Cook, E. Carlin, P. J. Moeller, R. J. Nagler, B. Nash, M. Rakitin, A. Barbour, and L. Wiegart, “An integrated platform for high performance data management and analysis at X-ray light sources”,18th International Conference on Accelerator and Large Experimental Physics Control Systems (ICALEPCS), (2021) | |

Simulations of Future Particle Accelerators: Issues and Mitigations | Sagan, D. | 2021 | JINST | D. Sagan, M. Berz, N.M. Cook, Y. Hao, G. Hoffstaetter, A. Huebl, C.-K. Huang, M.H. Langston, C. E. Mayes, C. E. Mitchell, C.-K. Ng, J. Qiang, R. D. Ryne, A. Scheinker, E. Stern, J.-L. Vay, D. Winklehner, H. Zhang, “Simulations of future particle accelerators: issues and mitigations”, 2021 JINST 16 T10002 (arxiv: https://arxiv.org/abs/2108.11027) | |

Modeling of Advanced Accelerator Concepts | Vay, J.-L. | 2021 | JINST | J.-L. Vay, A. Huebl, R. Lehe, N. M. Cook, R. J. England, U. Niedermayer, P. Piot, F. Tsung, D. Winklehner, “Modeling of advanced accelerator concepts”, 2021 JINST 16 T10003 (arxiv: https://arxiv.org/abs/2109.05133) | |

Advanced Modeling and Optimization of Thermionic Energy Converters | Edelen, J. | 2019 | 10th Int. Particle Accelerator Conf.(IPAC'19), Melbourne, Australia, 19-24 May 2019 | Edelen, J., Cook, N., Hall, C., Hu, Y. and Vay, J.L., 2019, June. Advanced Modeling and Optimization of Thermionic Energy Converters. In 10th Int. Particle Accelerator Conf.(IPAC'19), Melbourne, Australia, 19-24 May 2019 (pp. 3552-3554). JACOW Publishing, Geneva, Switzerland. | |

Status on a Laser Injection in Beam Driven Dielectric Wakefield Accelerator Experiment | Andonian, G. | 2019 | 10th Int. Partilce Accelerator Conf.(IPAC'19), Melbourne, Australia, 19-24 May 2019 | Andonian, G., Bruhwiler, D., Campese, T., Conde, M., Cook, N., Doran, D., Ha, G., O'Shea, F., Power, J., Rosenzweig, J. and Shao, J., 2019, June. Status on a Laser Injection in Beam Driven Dielectric Wakefield Accelerator Experiment. In 10th Int. Partilce Accelerator Conf.(IPAC'19), Melbourne, Australia, 19-24 May 2019 (pp. 3761-3763). JACOW Publishing, Geneva, Switzerland. http://www.jacow.org/ipac2019/papers/thpgw073.pdf | |

A Novel S-Based Symplectic Algorithm for Tracking With Space Charge | Edelen, J. | 2019 | In 10th Int. Particle Accelerator Conf.(IPAC'19), Melbourne, Australia, 19-24 May 2019 | Edelen, J., Abell, D., Bruhwiler, D., Cook, N., Hall, C. and Webb, S., 2019, June. A Novel S-Based Symplectic Algorithm for Tracking With Space Charge. In 10th Int. Particle Accelerator Conf.(IPAC'19), Melbourne, Australia, 19-24 May 2019 (pp. 3279-3282). JACOW Publishing, Geneva, Switzerland. http://accelconf.web.cern.ch/AccelConf/ipac2019/papers/wepts068.pdf | |

Knowledge Exchange Within the Particle Accelerator Community via Cloud Computing. | Bruhwiler, D. | 2019 | 10th Int. Particle Accelerator Conf.(IPAC'19), Melbourne, Australia, 19-24 May 2019 | Bruhwiler, D., Abell, D., Cook, N., Hall, C., Keilman, M., Moeller, P., Nagler, R. and Nash, B., 2019, June. Knowledge Exchange Within the Particle Accelerator Community via Cloud Computing. In 10th Int. Partile Accelerator Conf.(IPAC'19), Melbourne, Australia, 19-24 May 2019 (pp. 3548-3551). JACOW Publishing, Geneva, Switzerland. http://accelconf.web.cern.ch/AccelConf/ipac2019/papers/thpmp046.pdf | |

Advanced schemes for underdense plasma photocathode wakefield accelerators: pathways towards ultrahigh brightness electron beams | Manahan, G. G. | 2019 | Phil. Transactions of the Royal Society A | G. G. Manahan , A. F. Habib , P. Scherkl , D. Ullmann , A. Beaton , A. Sutherland , G. Kirwan , P. Delinikolas , T. Heinemann , R. Altuijri , A. Knetsch , O. Karger , N. M. Cook , D. L. Bruhwiler , Z.-M. Sheng , J. B. Rosenzweig and B. Hidding., 2019. Advanced schemes for underdense plasma photocathode wakefield accelerators: pathways towards ultrahigh brightness electron beams. Philosophical Transactions of the Royal Society A, 377(2151), p.20180182. http://dx.doi.org/10.1098/rsta.2018.0182 | |

Knowledge Exchange within the Particle Accelerator Community via Cloud Computing | D.L. Bruhwiler | 2019 | Proc. Int. Part. Accel. Conf., THPMP046 | D.L. Bruhwiler, D.T. Abell, N.M. Cook, C.C. Hall, M.V. Keilman, P. Moeller, R. Nagler, B. Nash, "Knowledge Exchange within the Particle Accelerator Community via Cloud Computing," Proc. Int. Part. Accel. Conf., THPMP046 (2019). | |

Symplectic modeling of beam loading in electromagnetic cavities. | S. D. Webb | 2017 | International Conference of RF Superconductivity (SRF17) | S. D. Webb, N. M. Cook, D. T. Abell and D. L. Bruhwiler "Symplectic modeling of beam loading in electromagnetic cavities." International Conference of RF Superconductivity (SRF17), Lanzou, China(July, 2017). | |

Symplectic modeling of beam loading in electromagnetic cavities. | Abell, D. T. | 2002 | Physical Review Accelerators and Beams | D. T. Abell, N. M. Cook, & S. D. Webb (2017). Symplectic modeling of beam loading in electromagnetic cavities. Physical Review Accelerators and Beams, 20(5), 2002. | |

Effects of Synchroton Motion on Nonlinear Optics | Webb, S. D. | 2018 | International Particle Accelerator Conference (IPAC2018), Vancouver, British Columbia, Canada | S. D. Webb, N. M. Cook, and J. S. Eldred "Effects of Synchroton Motion on Nonlinear Optics", International Particle Accelerator Conference (IPAC2018), Vancouver, British Columbia, Canada (2018). | |

Efficient Simulations of Energy Recovery Linacs with Multiple High-Order Modes | Webb, S. D. | 2017 | Institute for Pure & Applied Mathematics (IPAM) Beam Dynamics Workshop, UCLA, California, USA | S. D. Webb, N. M. Cook and D. T. Abell "Efficient Simulations of Energy Recovery Linacs with Multiple High-Order Modes", Institute for Pure & Applied Mathematics (IPAM) Beam Dynamics Workshop, UCLA, California, USA (2017). | |

Nonlinear Integrable Optics with Space Charge in the IOTA Ring | Hall, C. C. | 2017 | Hadron Synchrotron Section (HSC) Section Meeting CERN | C. C. Hall, N. M. Cook, D. L. Bruwiler, S. D. Webb, A. Romanov, E. Prebys and A. Valishev "Nonlinear Integrable Optics with Space Charge in the IOTA Ring" Hadron Synchrotron Section (HSC) Section Meeting CERN, Geneva, Switzerland (2017) | |

Optimization of space-charge limited thermionic energy converters | Hall, C. C. | 2018 | American Physical Society (APS) April Meeting, Columbus, Ohio | C. C. Hall, N. M. Cook, J. P. Edelman and J-L Vay "Optimization of space-charge limited thermionic energy converters", American Physical Society (APS) April Meeting, Columbus, Ohio, USA 2018 | |

S-based symplectic tracking with space charge and applications to IOTA | Cook, N. M. | 2018 | IOTA/FAST Collaboration Meeting, Batavia, Illinois | ||

Self-Consistent Simulation and Optimization of Space-Charge Limited Thermionic Energy Converters | Cook, N. M. | 2018 | International Particle Accelerator Conference (IPAC 2018), Vancouver, British Columbia, | N. M. Cook, C. C. Hall, J. P. Edelen and J-L Vay "Self-Consistent Simulation and Optimization of Space-Charge Limited Thermionic Energy Converters" International Particle Accelerator Conference (IPAC 2018), Vancouver, British Columbia, Canada (2018). | |

Simulation of Perturbative Effects in IOTA | Hall, C. C. | 2018 | International Particle Accelerator Conference (IPAC 2018), Vancouver, British Columbia, Canada | C. C. Hall, D. L. Bruhwiler, N. M. Cook, J. P. Edelen and S. D. Webb "Simulation of Perturbative Effects in IOTA", International Particle Accelerator Conference (IPAC 2018), Vancouver, British Columbia, Canada 2018 | |

Simulations of Nonlinear Decoherence with Space Charge in the IOTA Ring | Hall, C. C. | 2017 | FAST/IOTA Collaboration Meeting, Chicago, Illinois, USA | C. C. Hall, N. M. Cook, D. L. Bruwiler, S. D. Webb, A. Romanov, E. Prebys and A. Valishev "Simulations of Nonlinear Decoherence with Space Charge in the IOTA Ring", FAST/IOTA Collaboration Meeting, Chicago, Illinois, USA (2017). | |

An s-Based Symplectic Spectral Space Charge Algorithm | Cook, N. M. | 2018 | International Particle Accelerator Conference (IPAC 2018), Vancouver, British Columbia, Canada | N. M. Cook, J. P. Edelen, S. D. Webb, C. C. Hall, D. T. Abell and D. L. Bruhwiler "An s-Based Symplectic Spectral Space Charge Algorithm", International Particle Accelerator Conference (IPAC 2018), Vancouver, British Columbia, Canada (2018). | |

Browser-Based Guis for Synergia, Elegant and Other Accelerator Codes | Bruhwiler, D. L. | 2018 | International Particle Accelerator Conference (IPAC) 2018, Vancouver, British Columbia, Canada | D. L. Bruhwiler, P. J. Moeller, R. J. Nagler, C. C. Hall, N. M. Cook, M. V. Keilman, and G. Andonian "Browser-Based GUIs for Synergia, Elegant and Other Accelerator Codes" International Particle Accelerator Conference (IPAC) 2018, Vancouver, British Columbia, Canada (2018) | |

Correcting deviations from integrable motion in the IOTA proton ring | Cook, N. M. | 2017 | International Particle Accelerator Conference (IPAC 2017), Copenhagen, Denmark | N. M. Cook, C. C. Hall, S. D. Webb, A. L. Romanov, A. Valishev and D. L. Bruhwiler "Correcting deviations from integrable motion in the IOTA proton ring" International Particle Accelerator Conference (IPAC 2017), Copenhagen, Denmark (2017). | |

Effects of Synchrotron Motion on Nonlinear Integrable Optics | Webb, S. D. | 2018 | International Particle Accelerator Conference (IPAC 2018), Vancouver, British Columbia, Canada | Stephen D. Webb, N. M. Cook, and J. S. Eldred "Effects of Synchrotron Motion on Nonlinear Integrable Optics" International Particle Accelerator Conference (2018) | |

Simulation of Perturbative Effects in IOTA | Hall, C. C. | 2018 | International Particle Accelerator Conference (IPAC 2018), Vancouver, British Columbia, Canada | ||

Browser-based GUIs for Synergia, Elegant, and other particle accelerators | Bruhwiler, D. L. | 2018 | International Particle Accelerator Conference (IPAC 2018), Vancouver, British Columbia, Canada | David L. Bruhwiler, P. Moeller, R. Nagler, C. Hall, N. Cook, M. Keilman, and G. Andonian "Browser-based GUIs for Synergia, Elegant, and other particle accelerators." International Particle Accelerator Conference (IPAC 2018), Vancouver, British Columbia, Canada (2018) | |

Proton and Carbon tracking in an Ion Rapid Cycling Medical Synchrotron | Abell, D. T. | 2018 | International Particle Accelerator Conference (IPAC 2018), Vancouver, British Columbia, Canada | Dan T. Abell, D. L. Bruhwiler, N. M. Cook, S. Peggs, D. Trbojevic, F. Méot, V. L. Bailey, M. Subramanian and J. Lidestri "Proton and Carbon tracking in an Ion Rapid Cycling Medical Synchrotron". International Particle Accelerator Conference (2018) | |

An S-based Symplectic Space Charge Algorithm | Cook, N. M. | 2018 | International Particle Accelerator Conference (IPAC 2018), Vancouver, British Columbia, Canada | Nathan Cook, Jonathan P. Edelen, Stephen Webb, Christopher Hall, Dan T. Abell and David Bruhwiler. "An S-based Symplectic Space Charge Algorithm." International Particle Accelerator Conference (IPAC 2018), Vancouver, British Columbia, Canada (2018). | |

Self-Consistent Simulation and Optimization of Space-Charge Limited Thermionic Energy Converters | Cook, N. M. | 2018 | International Particle Accelerator Conference (IPAC 2018), Vancouver, British Columbia, Canada | Nathan Cook, Christopher Hall, Jonathan P. Edelen and Jean-Luc Vay. "Self-Consistent Simulation and Optimization of Space-Charge Limited Thermionic Energy Converters." International Particle Accelerator Conference (IPAC 2018), Vancouver, British Columbia, Canada (2018). | |

A Spectral Symplectic Algorithm for Cylindrical Electromagnetic Plasma Simulations | Webb, S. D. | 2017 | Physical Review E | S. D. Webb, D. T. Abell, N. M. Cook and D. L. Bruhwiler, “A Spectral Symplectic Algorithm for Cylindrical Electromagnetic Plasma Simulations,” Physical Review E (2017), submitted. | |

Space Charge Effects on Ion Beam Dynamics in the IOTA Ring | Bruhwiler, D.L. | 2015 | International Computational Accelerator Physics Conference, (Shanghai) | ||

Studies of a hybrid Trojan Horse wakefield accelerator with high transformer ratio | Cook, N.M. | 2015 | 57th APS Division of Plasma Physics Conf. (Savannah) | N.M. Cook, D.L. Bruhwiler, B. Hidding, J.-L. Vay and S.D. Webb, “Studies of a hybrid Trojan Horse wakefield accelerator with high transformer ratio,” presented at the 57th APS Division of Plasma Physics Conf. (Savannah, Nov. 2015). | |

Nonlinear proton dynamics in the IOTA ring. | Cook, N.M. | 2015 | Proton Accelerators for Science and Innovation Workshop, (Batavia) | N.M. Cook, “Nonlinear proton dynamics in the IOTA ring,” presented at the Proton Accelerators for Science and Innovation Workshop, (Batavia, Nov. 2015). | |

Challenges to demonstrating integrable proton dynamics in IOTA. | Bruhwiler, D.L. | 2016 | Fermilab Seminar Series (Batavia) | D.L. Bruhwiler, S.D. Webb, N.M. Cook, C. Hall, A.L. Romanov, A. Valishev and R. Kishek, “Challenges to demonstrating integrable proton dynamics in IOTA,” presented at the Fermilab Seminar Series (Batavia, May 2016). | |

Simulations of the IOTA Integrable Optics Experiment | Bruhwiler, D.L. | 2016 | Simulations of the IOTA Integrable Optics Experiment (Batavia) | D.L. Bruhwiler, S.D. Webb, N.M. Cook, C. Hall, A.L. Romanov, R. Nagler, P. Moeller, R. Kishek, A. Valishev, “Simulations of the IOTA Integrable Optics Experiment,” presented at the Simulations of the IOTA Integrable Optics Experiment (Batavia, June 2016). | |

Higher order perturbations to nonlinear integrable optics in IOTA | Cook, N.M. | 2016 | 57th ICFA Advanced Beam Dynamics Workshop on High-Intensity and High-Brightness Hadron Beams (Malmö) | N.M. Cook, C. Hall, S.D. Webb, R.A. Kishek, A. Valishev, A.L. Romanov and D.L. Bruhwiler, “Higher order perturbations to nonlinear integrable optics in IOTA,” presented at the 57th ICFA Advanced Beam Dynamics Workshop on High-Intensity and High-Brightness Hadron Beams (Malmö, July 2016). | |

Space Charge Effects on Ion Beam Dynamics and Integrability in the IOTA Ring | Cook, N.M. | 2016 | 57th ICFA Advanced Beam Dynamics Workshop on High-Intensity and High-Brightness Hadron Beams (Malmö) | N.M. Cook, C. Hall, S.D. Webb, R.A. Kishek, A. Valishev, A.L. Romanov and D.L. Bruhwiler, “Space Charge Effects on Ion Beam Dynamics and Integrability in the IOTA Ring,” presented at the 57th ICFA Advanced Beam Dynamics Workshop on High-Intensity and High-Brightness Hadron Beams (Malmö, July 2016). | |

Survey of Variational Algorithms for Modeling Intense Beams | Webb, S.D. | 2016 | 57th ICFA Advanced Beam Dynamics Workshop on High-Intensity and High-Brightness Hadron Beams (Malmö) | S.D. Webb, E.G. Evstatiev and N.M. Cook, “Survey of Variational Algorithms for Modeling Intense Beams,” presented at the 57th ICFA Advanced Beam Dynamics Workshop on High-Intensity and High-Brightness Hadron Beams (Malmö, July 2016). | |

Understanding perturbations to nonlinear integrable optics in IOTA | Cook, N. | 2016 | Advanced Accel. Concepts Workshop (National Harbor) | N. Cook, S.D. Webb, D.L. Bruhwiler, C. Hall, R. Kishek, A. Valishev, A. Romanov, E. Prebys and S. Nagaitsev, “Understanding perturbations to nonlinear integrable optics in IOTA,” presented at the Advanced Accel. Concepts Workshop (National Harbor, Aug. 2016). | |

Adaptive Matching of the IOTA Ring Linear Optics for Space Charge Compensation. | Romanov, A. | 2016 | North American Particle Accelerator Conf. (Chicago) | A. Romanov, A. Valishev, D.L. Bruhwiler, N.M. Cook and C. Hall, “Adaptive Matching of the IOTA Ring Linear Optics for Space Charge Compensation,” presented at the North American Particle Accelerator Conf. (Chicago, October 2016). | |

Nonlinear dynamics, dispersive, and chromatic considerations in the IOTA lattice | Cook, N. M. | 2016 | North American Particle Accelerator Conf. (Chicago) | N. M. Cook, C. Hall, S.D. Webb, R. Kishek, A. Valishev, A. L. Romanov and D. L. Bruhwiler, “Nonlinear dynamics, dispersive, and chromatic considerations in the IOTA lattice,” presented at the North American Particle Accelerator Conf. (Chicago, October 2016). | |

Efficient Simulations of Energy Recovery Linacs with Multiple High-Order Modes. | Abell, D. T. | 2016 | North American Particle Accelerator Conf. (Chicago) | D. T. Abell, N. M. Cook, C. Hall and S. D. Webb, “Efficient Simulations of Energy Recovery Linacs with Multiple High-Order Modes,” presented at the North American Particle Accelerator Conf. (Chicago, October 2016). | |

Impact of Space Charge on Beam Dynamics and Integrability in the IOTA Ring. | Hall, C. | 2016 | North American Particle Accelerator Conf. (Chicago) | C. C. Hall, D. L. Bruhwiler, N. M. Cook, S. D. Webb, A. Romanov, A. Valishev, and R. Kishek, “Impact of Space Charge on Beam Dynamics and Integrability in the IOTA Ring,” presented at the North American Particle Accelerator Conf. (Chicago, October 2016). | |

Proposed Experimental Validation of Hamiltonian Perturbation Theory in IOTA | Bruhwiler, D. L. | 2016 (in preparation) | North American Particle Accel. Conf. (Chicago, 2016). | D. L. Bruhwiler, S. D. Webb, N. M, Cook, C. Hall, A. Romanov, R. Nagler, P. Moeller, R. Kishek and A. Valishev, “Proposed Experimental Validation of Hamiltonian Perturbation Theory in IOTA,” North American Particle Accel. Conf. (Chicago, 2016), in preparation. | |

Beam plasma acceleration – a case study in computational reproducibility and open science | Bruhwiler, D.L. | 2015 | Intern. Comp. Accel. Physics Conf. (Shanghai, 2015) | D.L. Bruhwiler, R. Nagler, P. Moeller, R. Lehe, J.-L. Vay, B. Hidding, G. Andonian, Y. Xi, S.D. Webb and N. Cook, “Beam plasma acceleration – a case study in computational reproducibility and open science,” Intern. Comp. Accel. Physics Conf. (Shanghai, 2015). | |

Symplectic Modeling of Beam Loading in Electromagnetic Cavities | Abell, D. T. | 2017 | Phys. Rev. Accel. Beams | D. T. Abell, N. M. Cook & S. D. Webb, “Symplectic Modeling of Beam Loading in Electromagnetic Cavities,” Phys. Rev. Accel. Beams 20, 052002 (2017); https://arxiv.org/abs/1611.00343 |